The Phytochemistry of Herbs

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Flavonoid Antioxidants
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Flavonoids, the most abundant polyphenols in the diet, can be classified into ten groups based on differences in their chemical structures. The intermediate page will use chemical structures this month, because it's hard to understand the differences between flavonoids without seeing a picture. I've tried to explain the "hieroglyphs" in the text accompanying them for herbalists who haven't studied organic chemistry. See the glossary for definitions as needed.

On the left below is the basic "flavan nucleus," the foundation structure upon which flavonoids are constructed. If you look at all the flavonoid structures, you will see that they have this pattern, or a variation of it, in common.

flavan nucleus

In this map of a chemical structure, the point of each angle represents a carbon atom. The lines between the points show chemical bonds between adjacent atoms. The 'A' ring and the 'B' ring are made of six carbon atoms each which are bonded together to form a special structure known as an aromatic ring. The numbers next to each point are called  "positions" on this structure. At each position is a carbon atom where specific small groups of atoms called functional groups may attach. The A ring and the B ring are attached to each other by a "three-carbon bridge" (shaded area). This bent bridge, along with an oxygen atom, makes up the 'C' ring.

The different classes of flavonoid structures are distinguished by fairly minor variations on this pattern. Below are the basic structures of eight of the different classes. Within each of these classes, there are many further variations on the theme. Some examples are given after the basic skeletons of each class.

Anthocyanidins and Anthocyanins: These molecules are very similar to the flavan nucleus above. One difference is that the oxygen atom has a positive charge on it; there are also two double bonds in the C ring. There are many different kinds of anthocyanidins and anthocyanins, varying in the number and position of -OH groups, sugar groups, and other functional groups attached. Some are quite complicated, with parts of other flavonoid molecules attached to them. This class of flavonoids contains the pigments that give certain fruits, vegetables and herbs their dark red, blue, and purple colors. Many of them are antioxidants.
anthocyanidin Anthocyanidin (aglycone). This kind of molecule lacks any attached sugars. Notice the -OH group at position 3. Various anthocyanidins have -OH groups at other positions on both the 'A' and 'B' rings. anthocyaninAnthocyanin (glycoside). In this skeleton, the -OH group at position 3 has been replaced by one (or more) sugar molecules. In some anthocyanins, there are additional sugar groups attached at other positions as well.
cyanidinThis is a particular type of anthocyanidin aglycone known as Cyanidin. It's composed of the basic anthocyanidin skeleton with four more -OH groups attached at positions 5, 7, 4' and 5'. Cyanidin is found in Grapes, Bilberry, Blueberries, Black Cherry, Cocoa powder, and many other medicinal herbs and foods. cyaninThis is the glycoside of cyanidin, known as Cyanin. It differs from Cyanidin by having glucose molecules replace the -OH groups at positions 3 and 5. It is found in Elderberry and many of the same plants that contain cyanidin.
Proanthocyanidins: This group of important antioxidants contains polymers made from multiple anthocyanidin-like  molecules, known as flavanols (see below). They are called proanthocyanidins because, if broken apart with acid treatment, proanthocyanidins yield anthocyanidins such as Cyanidin. Proanthocyanidin polymers consisting of two to ten or more subunits have been identified. Oligomeric proanthocyanidins (OPCs) are the water-soluble, short-chain polymers. Proanthocyanidins are sometimes referred to as "condensed tannins" and are responsible for astringency in many foods and medicinal herbs. Red wine contains many complex proanthocyanidins (extracted from grape skins and seeds); so do blueberries, blackberries, strawberries, elderberries, and other red/blue/purple colored plant parts.
Procyanidin C2This is a proanthocyanidin composed of three linked subunits. The shaded area represents one subunit, which is a flavanol known as Catechin (see below). This proanthocyanidin  is called Procyanidin C2.

(Why are some bonds represented as Wedges?).
Procyanidin B5Here is Procyanidin B5, consisting of two subunits linked 'sideways' compared to the architecture of Procyanidin C2.

Some of the more complex proanthocyanidins contain subunits linked in both ways. Some phytochemists believe that the larger, yet-to-be-identified molecules in complex substances such as aged red wine could have fifty or more of these linked subunits.

Flavanols:  Let's look at a particular type of flavanol known as a flavan-3-ol, which has an -OH group attached to the 3 position of the basic flavan skeleton. The "-ol" ending comes from the word "alcohol" which generally means "an organic molecule with an -OH group attached (i.e., ethanol)." Flavan-3-ols are the subunits of proanthocyanidins. Their structures are very similar to those of anthocyanidins, except that there is no positive charge on the oxygen atom and no double bonds in the C ring.
flavan-3-olHere is the basic flavan-3-ol skeleton. It's just a flavan nucleus with an -OH group attached to position 3 of the C ring. catechinThis is Catechin, a common flavan-3-ol that occurs in many plants. It's found in Green tea, Cocoa powder, Red wine, Hawthorn, Bilberry, Motherwort, and other herbs. It is also a common subunit of proanthocyanidin polymers such as Procyanidin C2 above. Epicatechin is another common example; it differs from Catechin only in the spatial orientation of its -OH group.
Flavonols:  Notice this word is spelled with an "o" instead of with an "a" as in "flavanols". This means that the molecule has a double-bonded oxygen atom attached to position 4. They're still "-ols" because they retain the -OH group at position 3 like the flavanols; but they also have a double-bonded oxygen atom, which makes them like another class of flavonoids known as "flavones" (see below).
flavonolThis is the basic flavonol skeleton, with the -OH at position 3 and the =O at position 4. It also differs from flavanols by having a double bond between carbons 2 and 3 on the C ring. quercetinHere's the common flavonol, Quercetin. It's  the most abundant flavonol in the diet and is found in hundreds of herbs and foods. Onions are especially rich in Quercetin. It has proven antioxidant effects.
Flavones:  Flavones are like flavonols, without the "-ol." In other words, there is no longer an -OH group at position 3 on the central ring.
flavoneHere's the basic flavone skeleton, with the =O at position 4 and the double bond between carbons 2 and 3. apigeninThis is Apigenin, a flavone with -OH groups added to positions 5, 7, and 4'. It's another very common flavonoid, appearing in many medicinal plants and foods such as celery. Another flavone is luteolin, found in sweet red peppers.
Flavanone:  Take away the double bond between carbons 2 and 3 of the flavone structure, and you have a flavanone. Notice the "o" has changed back to an "a," which indicates that the flavanones have a single bond between carbons 2 and 3, like the basic flavan nucleus at the top of this page.
FlavanoneThe basic flavanone skeleton retains the =O, which makes it an "-one." Many flavanones occur as glycosides; for example, hesperitin (aglycone) and hesperidin (glycoside) occur in citrus along with naringenin  (--->) naringeninNaringenin, an antioxidant flavanone from citrus species, has   -OH groups attached at positions 5, 7, and 4'. Studies have indicated that it has anti-inflammatory, anti-cancer, and liver protective effects.

Isoflavones: Isoflavones (also known as isoflavonoids) are very similar to flavones, except the B ring is attached to position 3 of the C ring, rather than to position 2 as in the flavones:

flavoneTo the left is the basic flavone skeleton, with the B ring attached to position 2isoflavone
of the central ring. On the right is the isoflavone skeleton,
which is exactly the same as the flavone skeleton but with the B ring
attached to position 3. "Iso" is short for "isomer."

genisteinHere is the isoflavone Genistein, found in Red clover, Alfalfa, Peas, Soy & other legumes. It consists of the basic isoflavone skeleton with -OH groups attached at positions 5, 7, and 4'. Genistein is protective against breast, prostate, and colon cancers and can help with hot flashes and osteoporosis prevention. daidzeinThis isoflavone, Daidzein, is very similar to Genistein, only lacking the -OH group at position 5. It's found in the same kinds of plants as Genistein and acts in much the same way. Both of these isoflavones are anti-inflammatory and show cardioprotective and mild antioxidant activities.

For in-depth information on flavonoids in berries, see this interesting doctoral dissertation from Finland.

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